[A12][a3]
- Classes: All alpha proteins
- Folds: Four-helical up-and-down bundle
- Superfamilies: Cytochromes
- Families: Cytochrome b562
- Protein Domains: Cytochrome b562
- Species: Escherichia coli [TaxId: 562]
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | ||
---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | |||||
1apc | [A] | [A] | [A] | SOLUTION NMR |
|||
1lm3 | [A2] | [A2] | [A2] | 2.7 | HEM:PROTOPORPHYRIN IX CONTAINING FE MG:MAGNESIUM ION | ||
1m6t | [A] | [A] | [A] | 1.81 | SO4:SULFATE ION | ||
1qpu | [A] | [A] | [A] | SOLUTION NMR |
HEM:PROTOPORPHYRIN IX CONTAINING FE | ||
1qq3 | [A] | [A] | [A] | SOLUTION NMR |
HEB:HEME B/C | ||
256b | [A] | [A] | [A] | 1.4 | HEM:PROTOPORPHYRIN IX CONTAINING FE SO4:SULFATE ION | ||
2qla | [A4] | [A4] | [A4] | 2.9 | HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3c62 | [A4] | [A4] | [A4] | 1.87 | CA:CALCIUM ION HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3c63 | [A4] | [A4] | [A4] | 1.75 | CA:CALCIUM ION HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3de8 | [A4] | [A4] | [A4] | 1.72 | CA:CALCIUM ION CU:COPPER (II) ION HEM:PROTOPORPHYRIN IX CONTAINING FE | ||
3de9 | [A3] | [A3] | [A3] | 2.04 | HEM:PROTOPORPHYRIN IX CONTAINING FE NI:NICKEL (II) ION | ||
3foo | [A3] | [A3] | [A3] | 2.4 | HEM:PROTOPORPHYRIN IX CONTAINING FE NI:NICKEL (II) ION PXX:N-1,10-PHENANTHROLIN-5-YLACETAMIDE | ||
3fop | [A] | [A] | [A] | 3 | HEM:PROTOPORPHYRIN IX CONTAINING FE NI:NICKEL (II) ION PXX:N-1,10-PHENANTHROLIN-5-YLACETAMIDE | ||
3hni | [A4] | [A4] | [A4] | 2.35 | HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3hnj | [A4] | [A4] | [A4] | 2 | HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3hnk | [A2] | [A2] | [A2] | 2.1 | HEM:PROTOPORPHYRIN IX CONTAINING FE | ||
3hnl | [A2] | [A2] | [A2] | 2.2 | CL:CHLORIDE ION CU:COPPER (II) ION HEM:PROTOPORPHYRIN IX CONTAINING FE | ||
3m15 | [A3] | [A3] | [A3] | 2.6 | HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3m4b | [A12] | [A12] | [A12] | 2.5 | ACT:ACETATE ION HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3m4c | [A12][a3] | [A12][a3] | [A12][a3] | 1.9 | ACT:ACETATE ION HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3m79 | [A4] | [A4] | [A4] | 2.1 | HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3nmi | [A] | [A] | [A] | 2.01 | ACT:ACETATE ION HEM:PROTOPORPHYRIN IX CONTAINING FE PXX:N-1,10-PHENANTHROLIN-5-YLACETAMIDE | ||
3nmj | [A] | [A] | [A] | 3.1 | HEM:PROTOPORPHYRIN IX CONTAINING FE NI:NICKEL (II) ION PXX:N-1,10-PHENANTHROLIN-5-YLACETAMIDE | ||
3nmk | [A] | [A] | [A] | 2.8 | HEM:PROTOPORPHYRIN IX CONTAINING FE PXX:N-1,10-PHENANTHROLIN-5-YLACETAMIDE ZN:ZINC ION | ||
3tol | [A2] | [A2] | [A2] | 2 | CA:CALCIUM ION HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
3tom | [A2] | [A2] | [A2] | 2.3 | HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
4je9 | [A4] | [A4] | [A4] | 2.12 | HEM:PROTOPORPHYRIN IX CONTAINING FE | ||
4jea | [A4] | [A4] | [A4] | 1.22 | HEM:PROTOPORPHYRIN IX CONTAINING FE SO4:SULFATE ION ZN:ZINC ION | ||
4jeb | [A4] | [A4] | [A4] | 2.3 | HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
4l6r | [A] | [A] | [A] | 3.3 | PEG:DI(HYDROXYETHYL)ETHER | ||
4u9d | [A4] | [A4] | [A4] | 2.5 | HEC:HEME C ZN:ZINC ION | ||
4u9e | [A4] | [A4] | [A4] | 2.8 | CA:CALCIUM ION HEC:HEME C ZN:ZINC ION | ||
5awi | [A2] | [A2] | [A2] | 1.85 | HEC:HEME C SO4:SULFATE ION ZN:ZINC ION | ||
5bu7 | [A4] | [A4] | [A4] | 2.46 | HEM:PROTOPORPHYRIN IX CONTAINING FE ZN:ZINC ION | ||
5l31 | [A3B] | [A4] | [A4] | 2.4 | CSO:S-HYDROXYCYSTEINE HEC:HEME C NA:SODIUM ION | ||
5l32 | [A4] | [A4] | [A4] | 2.1 | HEC:HEME C P6G:HEXAETHYLENE GLYCOL ZN:ZINC ION | ||
5xzi | [A4] | [A4] | [A4] | 2.65 | CL:CHLORIDE ION HEC:HEME C ZN:ZINC ION | ||
5xzj | [A4] | [A4] | [A4] | 1.98 | CL:CHLORIDE ION HEC:HEME C ZN:ZINC ION | ||
5ym7 | [A] | [A] | [A] | 1.56 | |||
5yo3 | [A] | [A] | [A] | 1.7 | SO4:SULFATE ION | ||
5yo4 | [A] | [A] | [A] | 1.37 | |||
5yo5 | [A] | [A] | [A] | 2.2 | |||
5yo6 | [A] | [A] | [A] | 1.2 | |||
6cbv | [ABC] | [ABC] | [ABC] | 1.87 | FMT:FORMIC ACID GOL:GLYCEROL NA:SODIUM ION | ||
6dhy | [A4] | [A4] | [A4] | 2.22 | CA:CALCIUM ION HEC:HEME C ZN:ZINC ION | ||
6dhz | [A8] | [A8] | [A8] | 2.8 | CA:CALCIUM ION HEC:HEME C | ||
6dy4 | [A] | [A] | [A] | 1.9 | FE:FE (III) ION HEC:HEME C | ||
6dy6 | [A] | [A] | [A] | 1.8 | 1PE:PENTAETHYLENE GLYCOL HEC:HEME C MN:MANGANESE (II) ION | ||
6dy8 | [A] | [A] | [A] | 1.9 | HEC:HEME C MN:MANGANESE (II) ION | ||
6dyb | [A] | [A] | [A] | 2.75 | CA:CALCIUM ION HEC:HEME C | ||
6dyc | [A] | [A] | [A] | 1.33 | CA:CALCIUM ION CO:COBALT (II) ION HEC:HEME C | ||
6dyd | [A] | [A] | [A] | 1.72 | CA:CALCIUM ION CU:COPPER (II) ION HEC:HEME C | ||
6dye | [A] | [A] | [A] | 2.25 | CA:CALCIUM ION FE:FE (III) ION HEC:HEME C | ||
6dyf | [A] | [A] | [A] | 1.1 | CL:CHLORIDE ION CU:COPPER (II) ION HEC:HEME C PEG:DI(HYDROXYETHYL)ETHER | ||
6dyg | [A] | [A] | [A] | 1.49 | FE:FE (III) ION HEC:HEME C MG:MAGNESIUM ION | ||
6dyh | [A] | [A] | [A] | 1.83 | HEC:HEME C V:VANADIUM ION | ||
6dyi | [A] | [A] | [A] | 1.96 | CA:CALCIUM ION CL:CHLORIDE ION CO:COBALT (II) ION HEC:HEME C | ||
6dyj | [A] | [A] | [A] | 1.96 | FE:FE (III) ION MG:MAGNESIUM ION | ||
6dyk | [A] | [A] | [A] | 1.96 | FE:FE (III) ION NO:NITRIC OXIDE | ||
6dyl | [A] | [A] | [A] | 1.69 | V:VANADIUM ION | ||
6ot4 | [A12] | [A12] | [A12] | 1.4 | FE:FE (III) ION HAE:ACETOHYDROXAMIC ACID HEC:HEME C ZN:ZINC ION | ||
6ot7 | [A12] | [A12] | [A12] | 1.85 | 1PE:PENTAETHYLENE GLYCOL FE:FE (III) ION HAE:ACETOHYDROXAMIC ACID HEC:HEME C ZN:ZINC ION | ||
6ot8 | [A6] | [A6] | [A6] | 1.5 | FE:FE (III) ION HAE:ACETOHYDROXAMIC ACID HEC:HEME C ZN:ZINC ION | ||
6ot9 | [A12] | [A12] | [A12] | 2.4 | FE:FE (III) ION HAE:ACETOHYDROXAMIC ACID HEC:HEME C ZN:ZINC ION | ||
6ovh | [A12] | [A12] | [A12] | ELECTRON MICROSCOPY 2.6 |
FE:FE (III) ION HAE:ACETOHYDROXAMIC ACID HEC:HEME C ZN:ZINC ION | ||
6wyu | [A3] | [A3] | [A3] | 1.76 | HEC:HEME C MPD:(4S)-2-METHYL-2,4-PENTANEDIOL SO4:SULFATE ION | ||
6wz0 | [A3] | [A3] | [A3] | 1.7 | FE2:FE (II) ION HEC:HEME C SO4:SULFATE ION | ||
6wz1 | [A3] | [A3] | [A3] | 2 | CA:CALCIUM ION CL:CHLORIDE ION HEC:HEME C MN:MANGANESE (II) ION | ||
6wz2 | [A3] | [A3] | [A3] | 2 | CL:CHLORIDE ION CO:COBALT (II) ION HEC:HEME C | ||
6wz3 | [A3] | [A3] | [A3] | 1.8 | CL:CHLORIDE ION CU:COPPER (II) ION HEC:HEME C PEG:DI(HYDROXYETHYL)ETHER | ||
6wz7 | [A3] | [A3] | [A3] | 2.3 | CA:CALCIUM ION CL:CHLORIDE ION HEC:HEME C MN:MANGANESE (II) ION | ||
6wza | [A3] | [A3] | [A3] | 2.5 | CL:CHLORIDE ION HEC:HEME C MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NA:SODIUM ION NI:NICKEL (II) ION | ||
6wzc | [A3] | [A3] | [A3] | 2.2 | CA:CALCIUM ION CL:CHLORIDE ION HEC:HEME C NI:NICKEL (II) ION | ||
6x7e | [A3] | [A3] | [A3] | 2 | CL:CHLORIDE ION CO:COBALT (II) ION HEC:HEME C MG:MAGNESIUM ION | ||
6x8x | [A3] | [A3] | [A3] | 2.51 | CA:CALCIUM ION CU:COPPER (II) ION HEC:HEME C |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA